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structboost 0.5.0
structboost 0.5.0
  • Installation
  • User guide
    • How the BAE works
    • The standardization contract
    • What a fit writes into your AnnData
    • Reading reconstruction quality
    • Fitting a model
    • Getting a gene list you can trust
    • Batches and unwanted covariates
    • Transferring a model to a new dataset
    • Interpreting latent dimensions
    • Saving and loading a model
    • Simulating data with known truth
    • Sparse supervised boosting
  • API reference
    • structboost.BAE
    • structboost.BAEConfig
    • structboost.TrainingReport
    • structboost.stability_selection
    • structboost.StabilitySelectionResult
    • structboost.linear_ceiling
    • structboost.encode_obs_covariates
    • structboost.transform_obs_covariates
    • structboost.ObsCovariateEncoding
    • structboost.read_encoder_weights
    • structboost.write_encoder_weights
    • structboost.looks_like_ensembl
    • structboost.extract_gene_rankings
    • structboost.write_annotations_to_h5ad
    • structboost.DimensionAnnotation
    • structboost.DimensionGeneRanking
    • structboost.GeneRanking
    • structboost.export_interactive_html
    • structboost.plot_training_diagnostics
    • structboost.plot_boosting_coefficient_paths
    • structboost.plot_top_boosting_coefficients
    • structboost.allboost
    • structboost.column_norms_sq
    • structboost.AllboostHistory
    • structboost.compute_covariance_cache
    • structboost.sim_scrnaseq_data
    • structboost.sim_scrnaseq_anndata
    • structboost.SimulationResult
  • Release notes
  • Contributing
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